Package: FBN 1.5.2
FBN: FISH Based Normalization and Copy Number Inference of SNP Microarray Data
Normalizes the data from a file containing the raw values of the SNP probes of microarray data by using the FISH probes and their corresponding copy number.
Authors:
FBN_1.5.2.tar.gz
FBN_1.5.2.zip(r-4.5)FBN_1.5.2.zip(r-4.4)FBN_1.5.2.zip(r-4.3)
FBN_1.5.2.tgz(r-4.4-any)FBN_1.5.2.tgz(r-4.3-any)
FBN_1.5.2.tar.gz(r-4.5-noble)FBN_1.5.2.tar.gz(r-4.4-noble)
FBN_1.5.2.tgz(r-4.4-emscripten)FBN_1.5.2.tgz(r-4.3-emscripten)
FBN.pdf |FBN.html✨
FBN/json (API)
| # Install 'FBN' in R: |
| install.packages('FBN', repos = c('https://biointf.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- FISHprobes - Sample data for FBN package
- hmcls - Sample data for FBN package
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 1 years agofrom:ff43e230b6. Checks:OK: 3 NOTE: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 12 2024 |
| R-4.5-win | NOTE | Sep 12 2024 |
| R-4.5-linux | NOTE | Sep 12 2024 |
| R-4.4-win | NOTE | Sep 12 2024 |
| R-4.4-mac | NOTE | Sep 12 2024 |
| R-4.3-win | OK | Sep 12 2024 |
| R-4.3-mac | OK | Sep 12 2024 |
Exports:FBN.histogramMaximaFBN.kmeansFBN.valueCenterFBNormalizationmeanFiltermedianFilter
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| FISH Based Normalization and Copy Number Inference of SNP Microarray Data | FBN-package FBN |
| Local maxima of the histogram of SNP microarray data | FBN.histogramMaxima |
| K-Means clustering of SNP microarray data | FBN.kmeans |
| The SNP normalization function | FBN.valueCenter |
| FISH Based Normalization and Copy Number Inference of SNP Microarray Data | FBNormalization |
| Sample data for FBN package | FISHprobes |
| Sample data for FBN package | hmcls |
| 1D Mean Filter | meanFilter |
| 1D Median Filter | medianFilter |
