Package: FBN 1.5.2
FBN: FISH Based Normalization and Copy Number Inference of SNP Microarray Data
Normalizes the data from a file containing the raw values of the SNP probes of microarray data by using the FISH probes and their corresponding copy number.
Authors:
FBN_1.5.2.tar.gz
FBN_1.5.2.zip(r-4.7)FBN_1.5.2.zip(r-4.6)FBN_1.5.2.zip(r-4.5)
FBN_1.5.2.tgz(r-4.6-any)FBN_1.5.2.tgz(r-4.5-any)
FBN_1.5.2.tar.gz(r-4.7-any)FBN_1.5.2.tar.gz(r-4.6-any)
FBN_1.5.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
FBN/json (API)
| # Install 'FBN' in R: |
| install.packages('FBN', repos = c('https://biointf.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- FISHprobes - Sample data for FBN package
- hmcls - Sample data for FBN package
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:ff43e230b6. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 103 | ||
| source / vignettes | OK | 139 | ||
| linux-release-x86_64 | OK | 108 | ||
| macos-release-arm64 | OK | 108 | ||
| macos-oldrel-arm64 | OK | 124 | ||
| windows-devel | OK | 76 | ||
| windows-release | OK | 63 | ||
| windows-oldrel | OK | 60 | ||
| wasm-release | OK | 84 |
Exports:FBN.histogramMaximaFBN.kmeansFBN.valueCenterFBNormalizationmeanFiltermedianFilter
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| FISH Based Normalization and Copy Number Inference of SNP Microarray Data | FBN-package FBN |
| Local maxima of the histogram of SNP microarray data | FBN.histogramMaxima |
| K-Means clustering of SNP microarray data | FBN.kmeans |
| The SNP normalization function | FBN.valueCenter |
| FISH Based Normalization and Copy Number Inference of SNP Microarray Data | FBNormalization |
| Sample data for FBN package | FISHprobes |
| Sample data for FBN package | hmcls |
| 1D Mean Filter | meanFilter |
| 1D Median Filter | medianFilter |
